GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BRCA | cis | rs11185790 | 1 | rs11185795 | chr10:91375429 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.76 | 0.000178 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185796 | chr10:91375482 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.76 | 0.000178 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185797 | chr10:91375798 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.76 | 0.000178 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185798 | chr10:91375968 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.76 | 0.000178 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185799 | chr10:91377466 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.72 | 0.000213 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185800 | chr10:91378080 | FLJ37201 | chr10:91451057-91457685:- | -0.18 | -3.89 | 0.000106 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185801 | chr10:91378716 | FLJ37201 | chr10:91451057-91457685:- | -0.18 | -3.85 | 0.000126 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185802 | chr10:91378754 | FLJ37201 | chr10:91451057-91457685:- | -0.18 | -3.84 | 0.000129 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185804 | chr10:91379093 | FLJ37201 | chr10:91451057-91457685:- | 0.17 | 3.75 | 0.000185 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185806 | chr10:91380215 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.74 | 0.000192 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185808 | chr10:91381110 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.74 | 0.000196 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185809 | chr10:91381231 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.74 | 0.000192 | Metabolic traits |
| BRCA | cis | rs11185790 | 1 | rs11185810 | chr10:91381481 | FLJ37201 | chr10:91451057-91457685:- | -0.17 | -3.74 | 0.000197 | Metabolic traits |
| BRCA | cis | rs3781264 | 1 | rs11187851 | chr10:96069875 | NOC3L | chr10:96092989-96122683:- | 0.13 | 4.14 | 3.68E-5 | Esophageal cancer and gastric cancer |
| BRCA | cis | rs111803315 | 1 | rs111882043 | chr14:59899356 | C14orf149 | chr14:59939406-59951126:- | -0.3 | -4.29 | 1.98E-5 | Schizophrenia |